AMTR_s00059p00063470 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.41

Description : Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DDM1 chromatin remodeling factor


Gene families : OG_01_0000082 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000082_tree ,
OG_02_0005519 (LandPlants) Phylogenetic Tree(s): OG_02_0005519_tree ,
OG_03_0005694 (SeedPlants) Phylogenetic Tree(s): OG_03_0005694_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00063470
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AT5G18620 CHR17 chromatin remodeling factor17 0.05 Archaeplastida
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.05 Archaeplastida
Cpa|evm.model.tig00000144.188 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00000691.35 No alias Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre03.g158550 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Archaeplastida
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_16888 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.04 Archaeplastida
Pp3c13_14440V3.1 No alias transcription regulatory protein SNF2, putative 0.02 Archaeplastida
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.04 Archaeplastida
Pp3c20_11500V3.1 No alias chromatin remodeling 5 0.09 Archaeplastida
Pp3c3_23680V3.1 No alias chromatin remodeling 4 0.02 Archaeplastida
Smo102612 No alias Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.08 Archaeplastida
Solyc01g079690.4.1 No alias chromatin remodeling factor (Snf2) 0.06 Archaeplastida
Solyc01g090650.1.1 No alias chromatin remodeling factor (Alc) 0.02 Archaeplastida
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.11 Archaeplastida
Solyc06g054560.3.1 No alias chromatin remodeling factor (Iswi) 0.1 Archaeplastida
Solyc08g029130.3.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.04 Archaeplastida
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.03 Archaeplastida
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.05 Archaeplastida
Zm00001e017643_P001 No alias chromatin remodeling factor (Iswi) 0.04 Archaeplastida
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.05 LandPlants
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.05 LandPlants
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.02 LandPlants
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.03 LandPlants
Mp4g12200.1 No alias chromatin remodeling factor (DDM1) 0.04 LandPlants
Pp3c17_19520V3.1 No alias chromatin remodeling 1 0.03 LandPlants
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.09 LandPlants
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.03 LandPlants
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.04 LandPlants
AT5G66750 CHR01, CHR1,... chromatin remodeling 1 0.05 SeedPlants
GSVIVT01018979001 No alias ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.06 SeedPlants
LOC_Os09g27060.1 No alias chromatin remodeling factor (DDM1) 0.02 SeedPlants
MA_104034g0010 No alias chromatin remodeling factor (DDM1) 0.03 SeedPlants
Solyc02g062780.4.1 No alias chromatin remodeling factor (DDM1) 0.09 SeedPlants
Solyc02g085390.4.1 No alias chromatin remodeling factor (DDM1) 0.01 SeedPlants
Zm00001e005517_P002 No alias chromatin remodeling factor (DDM1) 0.02 SeedPlants
Zm00001e011541_P001 No alias chromatin remodeling factor (DDM1) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000330 SNF2_dom 202 499
IPR001650 Helicase_C 556 635
No external refs found!