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  5. Pp3c12_20750V3.1

Pp3c12_20750V3.1 (Pp3c12_20750)


Aliases : Pp3c12_20750

Description : Alba DNA/RNA-binding protein


Gene families : OG0001187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c12_20750V3.1

Target Alias Description ECC score Gene Family Method Actions
Ceric.06G088300.1 Ceric.06G088300 R-loop reader protein *(ALBA1/2) & original description:... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.54 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01017289001 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
LOC_Os06g40040.1 LOC_Os06g40040 R-loop reader protein (ALBA1/2) 0.02 OrthoFinder output from all 47 species
MA_9428537g0010 No alias R-loop reader protein (ALBA1/2) 0.04 OrthoFinder output from all 47 species
Mp6g20280.1 No alias R-loop reader protein (ALBA1/2) 0.01 OrthoFinder output from all 47 species
Tin_g30398 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e016750_P002 Zm00001e016750 R-loop reader protein (ALBA1/2) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 20 82
No external refs found!