Pp3c12_17990V3.1 (Pp3c12_17990)

Aliases : Pp3c12_17990

Description : Ribosomal L38e protein family

Gene families : OG0004541 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004541_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c12_17990V3.1
Cluster	HCCA: Cluster_108

Target	Alias	Description	ECC score	Gene Family Method
AT2G43460	No alias	Ribosomal L38e protein family	0.06	OrthoFinder output from all 47 species
AT3G59540	No alias	Ribosomal L38e protein family	0.03	OrthoFinder output from all 47 species
Adi_g025750	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Aop_g32189	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Aop_g45408	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Azfi_s0319.g064444	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0662.g081457	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.07G049300.1	Ceric.07G049300	component *(eL38) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.28G050900.1	Ceric.28G050900	component *(eL38) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.35G022100.1	Ceric.35G022100	component *(eL38) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.35G022200.1	Ceric.35G022200	component *(eL38) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.35G022300.1	Ceric.35G022300	component *(eL38) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021719.6	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Cre07.g325746	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
Dac_g44338	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01010854001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01019051001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
Gb_16529	No alias	component RPL38 of LSU proteome component	0.1	OrthoFinder output from all 47 species
Gb_29252	No alias	component RPL38 of LSU proteome component	0.08	OrthoFinder output from all 47 species
LOC_Os11g24610.1	LOC_Os11g24610	component RPL38 of LSU proteome component	0.02	OrthoFinder output from all 47 species
MA_20588g0010	No alias	component RPL38 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Mp7g14520.1	No alias	component RPL38 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Pir_g03545	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Ppi_g26712	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Sam_g20427	No alias	component *(eL38) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo270247	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Solyc05g055640.4.1	Solyc05g055640	component RPL38 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	HCCA
BP	GO:0009060	aerobic respiration	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
CC	GO:0045275	respiratory chain complex III	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002675	Ribosomal_L38e	2	68

External Links

No external refs found!

Pp3c12_17990V3.1 (Pp3c12_17990)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation