LOC_Os04g56850 (Os04g0664400)


Aliases : Os04g0664400

Description : 27.3.4 RNA.regulation of transcription.ARF, Auxin Response Factor family Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167. auxin response factor 6 (ARF6)


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os04g56850
Cluster HCCA cluster: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.04 Gene family
GSVIVT01008639001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os01g54990 Os01g0753500 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
LOC_Os02g41800 Os02g0628600 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
LOC_Os11g32110 Os11g0523800 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
MA_85955g0020 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Smo117217 PACid_15403898 No description available 0.02 Gene family
Smo181406 PACid_15416095 No description available 0.02 Gene family
Smo437944 PACid_15421958 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Solyc00g188857.1.1 Solyc00g188857.1 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Solyc05g047460.3.1 Solyc05g047460.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc06g075150.3.1 Solyc06g075150.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Solyc07g016180.3.1 Solyc07g016180.3 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc11g069500.2.1 Solyc11g069500.2 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d001879 GRMZM2G078274 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.06 Gene family
Zm00001d001945 GRMZM2G034840 No description available 0.06 Gene family
Zm00001d002929 GRMZM5G808366 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
Zm00001d023659 GRMZM2G006042 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d026540 GRMZM2G086949 No description available 0.03 Gene family
Zm00001d026590 GRMZM2G475882 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
Zm00001d026687 GRMZM2G023813 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d031064 GRMZM2G081158 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
Zm00001d038698 GRMZM2G441325 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.05 Gene family
Zm00001d039006 GRMZM2G030710 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
Zm00001d041497 GRMZM2G073750 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
Zm00001d043922 GRMZM2G437460 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR033389 AUX/IAA_dom 808 939
IPR010525 Auxin_resp 269 351
IPR003340 B3_DNA-bd 143 244
No external refs found!