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  5. Pp3c11_18380V3.1

Pp3c11_18380V3.1 (Pp3c11_18380)


Aliases : Pp3c11_18380

Description : GATA type zinc finger transcription factor family protein


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_18380V3.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00168710 WLIM1,... RNA biosynthesis.transcriptional activation.LIM... 0.01 OrthoFinder output from all 47 species
Als_g03396 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g21872 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g15655 No alias LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene53056.t1 Aspi01Gene53056 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.01 OrthoFinder output from all 47 species
Len_g11762 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03720 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
MA_104604g0010 WLIM1 transcription factor (LIM) 0.01 OrthoFinder output from all 47 species
Pir_g31860 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g33833 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g00662 WLIM1 LIM-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e001173_P001 Zm00001e001173 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 109 164
IPR001781 Znf_LIM 10 64
No external refs found!