Pp3c10_8490V3.1 (RAD23B, RAD23, Pp3c10_8490)

Aliases : RAD23B, RAD23, Pp3c10_8490

Description : Rad23 UV excision repair protein family

Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c10_8490V3.1

Target	Alias	Description	ECC score	Gene Family Method
Adi_g081473	RAD23D	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.01	OrthoFinder output from all 47 species
Ala_g04223	RAD23-3, RAD23C	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0160.g054032	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
LOC_Os06g15360.1	RAD23-3, RAD23C,...	shuttle protein (RAD23)	0.01	OrthoFinder output from all 47 species
Lfl_g06028	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g09383	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.01	OrthoFinder output from all 47 species
Ore_g43759	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.02	OrthoFinder output from all 47 species
Pir_g64670	RAD23B, RAD23	ubiquitin-proteasome shuttle factor *(RAD23) & original...	0.01	OrthoFinder output from all 47 species
Solyc02g063133.1.1	RAD23-3, RAD23C,...	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Tin_g08949	RAD23-3, RAD23C	ubiquiTin-proteasome shuttle factor *(RAD23) & original...	0.01	OrthoFinder output from all 47 species
Tin_g30534	RAD23B, RAD23	ubiquiTin-proteasome shuttle factor *(RAD23) & original...	0.01	OrthoFinder output from all 47 species
Zm00001e030951_P001	RAD23D, Zm00001e030951	shuttle protein (RAD23)	0.01	OrthoFinder output from all 47 species
Zm00001e036768_P002	RAD23D, Zm00001e036768	shuttle protein (RAD23)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005524	ATP binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015360	XPC-bd	255	310
IPR015940	UBA	337	372
IPR015940	UBA	153	191
IPR000626	Ubiquitin-like_dom	3	76

External Links

No external refs found!

Pp3c10_8490V3.1 (RAD23B, RAD23, Pp3c10_8490)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation