LOC_Os04g55080 (Os04g0643600)


Aliases : Os04g0643600

Description : 34.22 transport.cyclic nucleotide or calcium regulated channels member of Cyclic nucleotide gated channel family cyclic nucleotide-gated channel 6 (CNGC6)


Gene families : OG_01_0000081 (Gene family) Phylogenetic Tree(s): OG0000081_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os04g55080
Cluster HCCA cluster: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
Smo113786 PACid_15418666 No description available 0.03 Gene family
Smo89324 PACid_15408478 No description available 0.03 Gene family
Solyc06g051920.3.1 Solyc06g051920.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family
Solyc07g006510.3.1 Solyc07g006510.3 34.22 transport.cyclic nucleotide or calcium regulated... 0.06 Gene family
Solyc12g010010.2.1 Solyc12g010010.2 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Zm00001d002099 GRMZM2G023037 34.22 transport.cyclic nucleotide or calcium regulated... 0.05 Gene family
Zm00001d021388 GRMZM2G135651 34.22 transport.cyclic nucleotide or calcium regulated... 0.02 Gene family
Zm00001d037035 GRMZM2G129375,... 34.22 transport.cyclic nucleotide or calcium regulated... 0.04 Gene family
Zm00001d053401 GRMZM2G148118 34.22 transport.cyclic nucleotide or calcium regulated... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA InterProScan
BP GO:0006811 ion transport IEA InterProScan
CC GO:0016020 membrane IEA InterProScan
BP GO:0055085 transmembrane transport IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 107 426
IPR000595 cNMP-bd_dom 522 611
No external refs found!