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  5. Mp6g10790.1

Mp6g10790.1


Description : protein factor PRPF6/PRP1/STA1 of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG_01_0003244 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003244_tree ,
OG_02_0003710 (LandPlants) Phylogenetic Tree(s): OG_02_0003710_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g10790.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AT4G03430 STA1, EMB2770 pre-mRNA splicing factor-related 0.03 Archaeplastida
Cpa|evm.model.tig00000880.19 No alias Protein STABILIZED1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre14.g633650 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.06 Archaeplastida
GSVIVT01030385001 No alias Protein STABILIZED1 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_02940 No alias protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 Archaeplastida
LOC_Os10g35550.1 No alias protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.01 Archaeplastida
MA_18853g0010 No alias protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.02 Archaeplastida
Pp3c24_11640V3.1 No alias pre-mRNA splicing factor-related 0.04 Archaeplastida
Solyc07g054200.4.1 No alias no hits & (original description: none) 0.09 Archaeplastida
Zm00001e018293_P001 No alias protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 Archaeplastida
AT4G03430 STA1, EMB2770 pre-mRNA splicing factor-related 0.03 LandPlants
GSVIVT01030385001 No alias Protein STABILIZED1 OS=Arabidopsis thaliana 0.04 LandPlants
Gb_02940 No alias protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 LandPlants
LOC_Os10g35550.1 No alias protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.01 LandPlants
MA_18853g0010 No alias protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.02 LandPlants
Pp3c24_11640V3.1 No alias pre-mRNA splicing factor-related 0.02 LandPlants
Solyc07g054200.4.1 No alias no hits & (original description: none) 0.07 LandPlants
Zm00001e018293_P001 No alias protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 LandPlants

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR010491 PRP1_N 18 184
No external refs found!