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  5. Mp8g17720.1

Mp8g17720.1


Description : no hits & (original description: none)


Gene families : OG0005880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp8g17720.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g104494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13294 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g69062 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.28G030000.1 Ceric.28G030000 not classified & original description: pacid=50570416... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000893.5 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre16.g685200 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g19099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012163001 No alias Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Lfl_g16585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g43027 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041627_P001 Zm00001e041627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e042214_P001 Zm00001e042214 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 794 861
IPR000504 RRM_dom 368 438
IPR000504 RRM_dom 13 80
IPR000504 RRM_dom 563 622
IPR000504 RRM_dom 685 761
No external refs found!