Mp8g13820.1 (AtRABG3d, RABG3d)

Aliases : AtRABG3d, RABG3d

Description : G-class RAB GTPase

Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp8g13820.1

Target	Alias	Description	ECC score	Gene Family Method
AT1G22740	ATRABG3B,...	RAB GTPase homolog G3B	0.02	OrthoFinder output from all 47 species
AT3G18820	ATRAB7B, RAB7B,...	RAB GTPase homolog G3F	0.06	OrthoFinder output from all 47 species
Adi_g021268	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g052881	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g12075	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g32641	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0307.g063993	AtRABG3d, RABG3d	G-class RAB GTPase & original description: CDS=107-727	0.06	OrthoFinder output from all 47 species
Cba_g04963	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g12280	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g43029	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.20G031900.1	ATRAB7B, RAB7B,...	G-class RAB GTPase & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000754.29	ATRABG3C, ATRAB7D, RABG3c	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Dcu_g14494	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g47846	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g49977	ATRABG3B,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07308	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01031953001	ATRAB7B, RAB7B,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
LOC_Os01g12730.1	AtRABG3d,...	G-class RAB GTPase	0.07	OrthoFinder output from all 47 species
LOC_Os05g44050.1	ATRAB7B, RAB7B,...	G-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Len_g11961	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Len_g54625	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g41098	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g18574	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g00597	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g55417	ATRABG2, ATRAB7A, RAB7A	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011168	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: CDS=38-799	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0287.g027148	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: CDS=209-802	0.03	OrthoFinder output from all 47 species
Smo228214	AtRABG3d, RABG3d	Vesicle trafficking.regulation of membrane tethering and...	0.04	OrthoFinder output from all 47 species
Solyc01g109520.3.1	ATRAB7B, RAB7B,...	G-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Spa_g12567	ATRABG3C, ATRAB7D, RABG3c	G-class RAB GTPase & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g53072	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g55684	ATRABG2, ATRAB7A, RAB7A	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005092	GDP-dissociation inhibitor activity	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
BP	GO:0010215	cellulose microfibril organization	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1902600	proton transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	10	177

External Links

No external refs found!

Mp8g13820.1 (AtRABG3d, RABG3d)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation