Mp8g13160.1

Description : DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana (sp|f4ilr7|dexh1_arath : 535.0)

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp8g13160.1
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AT1G48650	No alias	DEA(D/H)-box RNA helicase family protein	0.02	OrthoFinder output from all 47 species
AT5G04895	No alias	DEA(D/H)-box RNA helicase family protein	0.02	OrthoFinder output from all 47 species
Adi_g021909	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g01587	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g04475	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g23619	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g05315	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene66410.t1	Aspi01Gene66410	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.1Z227800.1	Ceric.1Z227800	not classified & original description: pacid=50639140...	0.02	OrthoFinder output from all 47 species
Cre12.g492450	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
GSVIVT01034780001	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
LOC_Os01g02884.1	LOC_Os01g02884	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g41812	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_6081481g0010	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.01	OrthoFinder output from all 47 species
Ppi_g14536	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g07185	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g08954	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003856	3-dehydroquinate synthase activity	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006575	RWD-domain	471	563
IPR001650	Helicase_C	1022	1144
IPR007502	Helicase-assoc_dom	1208	1296
IPR011545	DEAD/DEAH_box_helicase_dom	731	879
IPR014720	dsRBD_dom	108	176
IPR011709	DEAD-box_helicase_OB_fold	1374	1472

External Links

No external refs found!

Mp8g13160.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation