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  5. Mp8g01840.1

Mp8g01840.1 (CAF2, ATCAF2)


Aliases : CAF2, ATCAF2

Description : CRS2-associated factor 1, chloroplastic OS=Zea mays (sp|q84n49|caf1p_maize : 216.0)


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp8g01840.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0435.g069919 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Ehy_g19169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08909 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Ore_g08767 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.02 OrthoFinder output from all 47 species
Pir_g12535 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006281 DNA repair IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 487 570
IPR001890 RNA-binding_CRM 602 685
No external refs found!