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  5. Mp7g17480.1

Mp7g17480.1


Description : primase component POLA3 of DNA polymerase alpha complex


Gene families : OG0007515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g17480.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT1G67320 No alias DNA primase, large subunit family 0.12 OrthoFinder output from all 47 species
Ala_g15183 No alias primase component *(POLA3) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Als_g00918 No alias primase component *(POLA3) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Aop_g06919 No alias primase component *(POLA3) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Aspi01Gene00133.t1 Aspi01Gene00133 primase component *(POLA3) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Azfi_s0242.g059810 No alias primase component *(POLA3) of DNA polymerase alpha... 0.14 OrthoFinder output from all 47 species
Ceric.22G004000.1 Ceric.22G004000 primase component *(POLA3) of DNA polymerase alpha... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020848.68 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.1 OrthoFinder output from all 47 species
Cre06.g293000 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.11 OrthoFinder output from all 47 species
Dac_g13828 No alias primase component *(POLA3) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Dcu_g14762 No alias primase component *(POLA3) of DNA polymerase alpha... 0.1 OrthoFinder output from all 47 species
GSVIVT01029087001 No alias Cell cycle.interphase.DNA replication.elongation.DNA... 0.09 OrthoFinder output from all 47 species
Gb_25310 No alias Probable DNA primase large subunit OS=Arabidopsis... 0.15 OrthoFinder output from all 47 species
Gb_25312 No alias primase component POLA3 of DNA polymerase alpha complex 0.13 OrthoFinder output from all 47 species
LOC_Os07g22400.2 LOC_Os07g22400 primase component POLA3 of DNA polymerase alpha complex 0.1 OrthoFinder output from all 47 species
MA_99205g0020 No alias primase component POLA3 of DNA polymerase alpha complex 0.17 OrthoFinder output from all 47 species
Msp_g07837 No alias primase component *(POLA3) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Nbi_g10404 No alias primase component *(POLA3) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Ppi_g63485 No alias primase component *(POLA3) of DNA polymerase alpha... 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015210 No alias primase component *(POLA3) of DNA polymerase alpha... 0.12 OrthoFinder output from all 47 species
Sam_g38827 No alias primase component *(POLA3) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Solyc04g045530.4.1 Solyc04g045530 primase component POLA3 of DNA polymerase alpha complex 0.04 OrthoFinder output from all 47 species
Spa_g08160 No alias primase component *(POLA3) of DNA polymerase alpha... 0.09 OrthoFinder output from all 47 species
Tin_g10410 No alias primase component *(POLA3) of DNA polymerase alpha... 0.15 OrthoFinder output from all 47 species
Zm00001e039405_P003 Zm00001e039405 primase component POLA3 of DNA polymerase alpha complex 0.02 OrthoFinder output from all 47 species
Zm00001e040751_P005 Zm00001e040751 primase component POLA3 of DNA polymerase alpha complex 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006269 DNA replication, synthesis of RNA primer IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032780 negative regulation of ATP-dependent activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0043462 regulation of ATP-dependent activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051095 regulation of helicase activity IEP HCCA
BP GO:0051097 negative regulation of helicase activity IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1905462 regulation of DNA duplex unwinding IEP HCCA
BP GO:1905463 negative regulation of DNA duplex unwinding IEP HCCA
BP GO:1905774 regulation of DNA helicase activity IEP HCCA
BP GO:1905775 negative regulation of DNA helicase activity IEP HCCA
BP GO:2001251 negative regulation of chromosome organization IEP HCCA
InterPro domains Description Start Stop
IPR007238 DNA_primase_lsu_euk/arc 177 460
No external refs found!