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  5. Mp7g13850.1

Mp7g13850.1


Description : Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana (sp|q9sgq6|pp126_arath : 198.0)


Gene families : OG0007936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007936_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g13850.1

Target Alias Description ECC score Gene Family Method Actions
Aob_g13212 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0168.g054578 No alias not classified & original description: CDS=199-2913 0.02 OrthoFinder output from all 47 species
Cba_g04055 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.1Z004000.1 Ceric.1Z004000 not classified & original description: pacid=50628117... 0.04 OrthoFinder output from all 47 species
Ehy_g03955 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008674001 No alias Pentatricopeptide repeat-containing protein At1g76280... 0.02 OrthoFinder output from all 47 species
Gb_37339 No alias Pentatricopeptide repeat-containing protein At1g76280... 0.04 OrthoFinder output from all 47 species
LOC_Os09g29790.1 LOC_Os09g29790 Pentatricopeptide repeat-containing protein At1g76280... 0.05 OrthoFinder output from all 47 species
Lfl_g40600 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g082320.3.1 Solyc04g082320 Pentatricopeptide repeat-containing protein At1g76280... 0.02 OrthoFinder output from all 47 species
Tin_g08857 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17371 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e034440_P003 Zm00001e034440 Pentatricopeptide repeat-containing protein At1g76280... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005779 obsolete integral component of peroxisomal membrane IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 421 479
IPR002885 Pentatricopeptide_repeat 164 210
IPR002885 Pentatricopeptide_repeat 97 144
IPR002885 Pentatricopeptide_repeat 504 551
IPR002885 Pentatricopeptide_repeat 624 670
IPR002885 Pentatricopeptide_repeat 693 738
No external refs found!