Mp7g12880.1

Description : exoribonuclease (RRP6L)

Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp7g12880.1
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00037p00179540	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.exosome complex.associated...	0.02	OrthoFinder output from all 47 species
AT5G35910	No alias	Polynucleotidyl transferase, ribonuclease H fold protein...	0.02	OrthoFinder output from all 47 species
Aev_g08428	No alias	exoribonuclease *(RRP6L) & original description: none	0.01	OrthoFinder output from all 47 species
Aob_g14628	No alias	exoribonuclease *(RRP6L) & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.19G014700.1	Ceric.19G014700	exoribonuclease *(RRP6L) & original description:...	0.05	OrthoFinder output from all 47 species
Cre12.g512250	No alias	RNA processing.RNA decay.exosome complex.associated...	0.03	OrthoFinder output from all 47 species
GSVIVT01030425001	No alias	RNA processing.RNA decay.exosome complex.associated...	0.03	OrthoFinder output from all 47 species
Gb_34925	No alias	exoribonuclease (RRP6L)	0.03	OrthoFinder output from all 47 species
LOC_Os10g30100.1	LOC_Os10g30100	exoribonuclease (RRP6L)	0.05	OrthoFinder output from all 47 species
Lfl_g39504	No alias	exoribonuclease *(RRP6L) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g37433	No alias	exoribonuclease *(RRP6L) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006076	No alias	exoribonuclease *(RRP6L) & original description: CDS=21-2690	0.02	OrthoFinder output from all 47 species
Sam_g16356	No alias	exoribonuclease *(RRP6L) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g29907	No alias	exoribonuclease *(RRP6L) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e004727_P001	Zm00001e004727	exoribonuclease (RRP6L)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEA	Interproscan
CC	GO:0000178	exosome (RNase complex)	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905354	exoribonuclease complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002562	3'-5'_exonuclease_dom	257	423
IPR002121	HRDC_dom	480	524
IPR012588	Exosome-assoc_fac_Rrp6_N	33	110

External Links

No external refs found!

Mp7g12880.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation