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  5. Mp7g04570.1

Mp7g04570.1


Description : Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana (sp|q8vyr5|pp351_arath : 298.0)


Gene families : OG0005110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005110_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g04570.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00166p00033890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35850,... 0.04 OrthoFinder output from all 47 species
AT4G35850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
Als_g03710 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g14368 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g01276 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14871 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G086100.1 Ceric.05G086100 not classified & original description: pacid=50578539... 0.04 OrthoFinder output from all 47 species
Dde_g01491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032367001 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.06 OrthoFinder output from all 47 species
Gb_40110 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.03 OrthoFinder output from all 47 species
Gb_40112 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.02 OrthoFinder output from all 47 species
LOC_Os05g05320.1 LOC_Os05g05320 Pentatricopeptide repeat-containing protein At4g35850,... 0.07 OrthoFinder output from all 47 species
Len_g03290 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10434276g0010 No alias Pentatricopeptide repeat-containing protein At4g35850,... 0.02 OrthoFinder output from all 47 species
Nbi_g00854 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28616 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g02951 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g112020.3.1 Solyc01g112020 Pentatricopeptide repeat-containing protein At4g35850,... 0.1 OrthoFinder output from all 47 species
Spa_g11968 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g00889 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e027516_P001 Zm00001e027516 Pentatricopeptide repeat-containing protein At4g35850,... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 123 229
No external refs found!