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  5. Mp6g20280.1

Mp6g20280.1


Description : R-loop reader protein (ALBA1/2)


Gene families : OG0001187 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g20280.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00132470 evm_27.TU.AmTr_v1... Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g021359 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g044986 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g051544 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g080249 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g00544 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g42969 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g00666 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g51475 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene29595.t2 Aspi01Gene29595 R-loop reader protein *(ALBA1/2) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.20G014500.1 Ceric.20G014500 R-loop reader protein *(ALBA1/2) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000383.54 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01035831001 No alias Uncharacterized protein At2g34160 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_12779 No alias R-loop reader protein (ALBA1/2) 0.03 OrthoFinder output from all 47 species
LOC_Os01g07810.1 LOC_Os01g07810 R-loop reader protein (ALBA1/2) 0.06 OrthoFinder output from all 47 species
LOC_Os06g40040.1 LOC_Os06g40040 R-loop reader protein (ALBA1/2) 0.02 OrthoFinder output from all 47 species
Len_g14080 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g23884 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g31147 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g03820 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c12_20750V3.1 Pp3c12_20750 Alba DNA/RNA-binding protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000456 No alias R-loop reader protein *(ALBA1/2) & original description:... 0.02 OrthoFinder output from all 47 species
Spa_g35049 No alias R-loop reader protein *(ALBA1/2) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002775 DNA/RNA-bd_Alba-like 28 80
No external refs found!