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  5. AMTR_s00003p00240920

AMTR_s00003p00240920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00003.255

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG_01_0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000003 (LandPlants) Phylogenetic Tree(s): OG_02_0000003_tree ,
OG_03_0000056 (SeedPlants) Phylogenetic Tree(s): OG_03_0000056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00003p00240920
Cluster HCCA: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00191870 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00044p00221710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.02 Archaeplastida
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01037651001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
LOC_Os01g64620.1 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os02g15020.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os04g49000.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os05g39940.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os08g37760.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
LOC_Os09g29310.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os11g47690.1 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_12363g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_37578g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_552961g0010 No alias RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Pp3c21_17280V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo412609 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
Solyc03g112340.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g009487.1.1 No alias RING-H2 finger protein ATL20 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007208_P002 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e017509_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e019438_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Zm00001e022781_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e024702_P002 No alias NEP1-interacting protein-like 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e030102_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
AMTR_s00018p00191870 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 LandPlants
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.03 LandPlants
AT5G10380 ATRING1, RING1 RING/U-box superfamily protein 0.02 LandPlants
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants
Gb_04642 No alias RING-H2-class E3 ligase 0.02 LandPlants
Gb_20461 No alias RING-H2-class E3 ligase 0.02 LandPlants
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.01 LandPlants
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.01 LandPlants
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_12363g0010 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_26001g0020 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_61738g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_9143538g0010 No alias no hits & (original description: none) 0.02 LandPlants
Pp3c21_17280V3.1 No alias RING/U-box superfamily protein 0.02 LandPlants
Smo412609 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e002272_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e019438_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.05 LandPlants
Zm00001e022781_P001 No alias RING-H2-class E3 ligase 0.07 LandPlants
Zm00001e031874_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.03 SeedPlants
LOC_Os02g15080.1 No alias RING-H2-class E3 ligase 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 101 145
No external refs found!