Mp6g05580.1


Description : RNA helicase component MTR4/HEN2 of Nuclear Exosome Targeting (NEXT) activation complex


Gene families : OG_01_0000933 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000933_tree ,
OG_02_0002223 (LandPlants) Phylogenetic Tree(s): OG_02_0002223_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g05580.1
Cluster HCCA: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Archaeplastida
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.11 Archaeplastida
Cpa|evm.model.tig00020723.108 No alias RNA processing.RNA decay.exosome complex.associated... 0.07 Archaeplastida
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.06 Archaeplastida
Cre06.g289950 No alias RNA processing.RNA decay.exosome complex.associated... 0.05 Archaeplastida
GSVIVT01032255001 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.07 Archaeplastida
Gb_23155 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.06 Archaeplastida
Gb_30711 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 Archaeplastida
Gb_31984 No alias DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os02g06500.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 Archaeplastida
LOC_Os11g07500.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.13 Archaeplastida
MA_10426385g0010 No alias DExH-box ATP-dependent RNA helicase DExH10... 0.03 Archaeplastida
Pp3c10_7310V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Archaeplastida
Pp3c14_23340V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.19 Archaeplastida
Smo174598 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
Smo403447 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
Solyc01g103080.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.06 Archaeplastida
Solyc05g047520.4.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
Zm00001e013693_P002 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 Archaeplastida
Zm00001e025923_P001 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 Archaeplastida
Zm00001e036710_P004 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.14 Archaeplastida
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 LandPlants
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.1 LandPlants
GSVIVT01032255001 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 LandPlants
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.06 LandPlants
Gb_23155 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 LandPlants
Gb_31984 No alias DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis... 0.02 LandPlants
LOC_Os11g07500.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.12 LandPlants
MA_10426385g0010 No alias DExH-box ATP-dependent RNA helicase DExH10... 0.02 LandPlants
MA_107869g0010 No alias DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis... 0.01 LandPlants
Pp3c10_7310V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 LandPlants
Pp3c14_23340V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.17 LandPlants
Smo174598 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 LandPlants
Solyc01g103080.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 LandPlants
Solyc05g047520.4.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 LandPlants
Zm00001e025923_P001 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 LandPlants
Zm00001e036710_P004 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.13 LandPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012961 Ski2_C 834 1003
IPR025696 rRNA_proc-arch_dom 530 806
IPR011545 DEAD/DEAH_box_helicase_dom 87 233
No external refs found!