Description : component Sm-F of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex
Gene families : OG0002787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002787_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00029p00226370 | evm_27.TU.AmTr_v1... | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
AT2G43810 | No alias | Small nuclear ribonucleoprotein family protein | 0.04 | OrthoFinder output from all 47 species | |
AT4G30220 | RUXF | small nuclear ribonucleoprotein F | 0.03 | OrthoFinder output from all 47 species | |
Ala_g14592 | No alias | component *(LSm6) of U6-associated LSm accessory... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.36G038500.1 | RUXF, Ceric.36G038500 | component *(Sm-F) of U1/U2/U4/U5-associated Sm accessory... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000944.19 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001355.5 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.03 | OrthoFinder output from all 47 species | |
Cre03.g151750 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.08 | OrthoFinder output from all 47 species | |
Cre05.g241300 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.06 | OrthoFinder output from all 47 species | |
Dcu_g15755 | No alias | component *(LSm6) of U6-associated LSm accessory... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01003994001 | No alias | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os02g08090.1 | LOC_Os02g08090 | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os02g30624.2 | LOC_Os02g30624 | component LSm6 of U6-associated LSm accessory... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os04g31950.1 | LOC_Os04g31950 | component LSm6 of U6-associated LSm accessory... | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os11g43620.1 | LOC_Os11g43620 | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.03 | OrthoFinder output from all 47 species | |
MA_20554g0010 | No alias | component LSm6 of U6-associated LSm accessory... | 0.02 | OrthoFinder output from all 47 species | |
MA_26016g0010 | RUXF | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.03 | OrthoFinder output from all 47 species | |
Msp_g06683 | No alias | component *(LSm6) of U6-associated LSm accessory... | 0.02 | OrthoFinder output from all 47 species | |
Pp3c12_17630V3.1 | RUXF, Pp3c12_17630 | small nuclear ribonucleoprotein F | 0.03 | OrthoFinder output from all 47 species | |
Pp3c22_1090V3.1 | Pp3c22_1090 | Small nuclear ribonucleoprotein family protein | 0.02 | OrthoFinder output from all 47 species | |
Smo228181 | RUXF | RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... | 0.03 | OrthoFinder output from all 47 species | |
Smo268399 | No alias | RNA processing.RNA splicing.U6-associated LSm accessory... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e025108_P001 | RUXF, Zm00001e025108 | component Sm-F of U1/U2/U4/U5-associated Sm accessory... | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
MF | GO:0003725 | double-stranded RNA binding | IEP | HCCA |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
CC | GO:0005672 | transcription factor TFIIA complex | IEP | HCCA |
CC | GO:0005839 | proteasome core complex | IEP | HCCA |
BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
BP | GO:0006367 | transcription initiation at RNA polymerase II promoter | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008233 | peptidase activity | IEP | HCCA |
BP | GO:0009056 | catabolic process | IEP | HCCA |
BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | HCCA |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
MF | GO:0070003 | threonine-type peptidase activity | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
CC | GO:0140535 | intracellular protein-containing complex | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
CC | GO:1902494 | catalytic complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001163 | LSM_dom_euk/arc | 11 | 73 |
No external refs found! |