LOC_Os04g46450 (Os04g0550400)


Aliases : Os04g0550400

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. histone mono-ubiquitination 1 (HUB1)


Gene families : OG_01_0001524 (Gene family) Phylogenetic Tree(s): OG0001524_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os04g46450
Cluster HCCA cluster: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT1G55250 HUB2 histone mono-ubiquitination 2 0.03 Gene family
AT2G44950 RDO4, HUB1 histone mono-ubiquitination 1 0.02 Gene family
Cre14.g625802 No alias 29.5.11.4.99... 0.03 Gene family
GSVIVT01018223001 No alias 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING The... 0.05 Gene family
GSVIVT01025404001 No alias 29.5.11.4.99... 0.02 Gene family
MA_10430809g0010 No alias 29.5.11.4.99... 0.04 Gene family
MA_10430809g0020 No alias 29.5.11.4.99... 0.05 Gene family
MA_10433221g0010 No alias No description available 0.04 Gene family
MA_592562g0010 No alias 29.5.11.4.99... 0.05 Gene family
Smo175555 PACid_15421323 29.5.11.4.99... 0.05 Gene family
Solyc01g006040.3.1 Solyc01g006040.3 29.5.11.4.99... 0.03 Gene family
Zm00001d014640 GRMZM2G162184 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING The... 0.06 Gene family
Zm00001d029490 GRMZM2G341269,... 29.5.11.4.99... 0.01 Gene family

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

No InterPro domains available for this sequence

No external refs found!