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  5. Mp5g21520.1

Mp5g21520.1


Description : C3H zinc finger transcription factor


Gene families : OG0000627 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g21520.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00021560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
AT1G51530 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Adi_g112963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_37367 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Ppi_g58297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005782 No alias not classified & original description: CDS=1-2136 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009581 detection of external stimulus IEP HCCA
BP GO:0009582 detection of abiotic stimulus IEP HCCA
BP GO:0009583 detection of light stimulus IEP HCCA
BP GO:0009584 detection of visible light IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
BP GO:0018298 obsolete protein-chromophore linkage IEP HCCA
BP GO:0051606 detection of stimulus IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 438 491
IPR000571 Znf_CCCH 274 295
IPR025605 OST-HTH/LOTUS_dom 322 398
No external refs found!