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  5. Mp5g12580.1

Mp5g12580.1


Description : component U1A of U1 small nuclear ribonucleoprotein particle (snRNP). protein factor U2B of U2 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0003415 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g12580.1

Target Alias Description ECC score Gene Family Method Actions
Ceric.03G039600.1 Ceric.03G039600 component *(U2B) of U2 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000076.87 No alias U2 small nuclear ribonucleoprotein B OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021537.24 U2B'' RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Cre13.g566700 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dac_g03582 No alias component *(U2B) of U2 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04288 No alias component *(U2B) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009014 No alias component *(U2B) of U2 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Smo184747 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Solyc09g075200.4.1 U1A, Solyc09g075200 component U1A of U1 small nuclear ribonucleoprotein... 0.05 OrthoFinder output from all 47 species
Zm00001e031154_P002 U1A, Zm00001e031154 component U1A of U1 small nuclear ribonucleoprotein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006480 N-terminal protein amino acid methylation IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 11 81
IPR000504 RRM_dom 167 226
No external refs found!