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  5. Mp5g04230.1

Mp5g04230.1 (Y14)


Aliases : Y14

Description : component Y14 of RNA quality control Exon Junction complex


Gene families : OG0003013 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g04230.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT1G51510 Y14 RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Als_g23384 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cba_g05693 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021351.15 Y14 RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021352.5 Y14 RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
Cre12.g526750 Y14 RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01026504001 Y14 RNA processing.RNA quality control Exon Junction complex... 0.05 OrthoFinder output from all 47 species
LOC_Os05g04850.1 Y14, LOC_Os05g04850 component Y14 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species
Lfl_g01390 Y14 component *(Y14) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Tin_g04336 Y14 component *(Y14) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 102 166
No external refs found!