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  5. Mp5g03850.1

Mp5g03850.1


Description : component RPC82 of TFIIIe transcription factor complex


Gene families : OG0003612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g03850.1

Target Alias Description ECC score Gene Family Method Actions
Ala_g15614 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.01 OrthoFinder output from all 47 species
Aob_g26071 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.01 OrthoFinder output from all 47 species
Azfi_s0233.g059427 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.02 OrthoFinder output from all 47 species
Cba_g01187 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021221.7 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.02 OrthoFinder output from all 47 species
Cre16.g673900 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.05 OrthoFinder output from all 47 species
Dac_g08320 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.03 OrthoFinder output from all 47 species
LOC_Os01g48720.1 LOC_Os01g48720 component RPC82 of TFIIIe transcription factor complex 0.03 OrthoFinder output from all 47 species
Pir_g50885 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.01 OrthoFinder output from all 47 species
Ppi_g03017 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005051 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.03 OrthoFinder output from all 47 species
Sam_g24889 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.02 OrthoFinder output from all 47 species
Smo414649 No alias RNA biosynthesis.RNA polymerase III-dependent... 0.02 OrthoFinder output from all 47 species
Tin_g34268 No alias component *(NRPC13/RPC82) of TFIIIe transcription factor... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0030259 lipid glycosylation IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR008806 RNA_pol_III_Rpc82_C 153 385
IPR013197 RNA_pol_III_RPC82-rel_HTH 9 65
No external refs found!