Mp5g01600.1 (BUM1, SHL, STM, WAM, WAM1, BUM)

Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : transcription factor (KNOX)

Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp5g01600.1

Target	Alias	Description	ECC score	Gene Family Method
Als_g02808	No alias	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g09026	BUM1, SHL, STM,...	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.20G046300.1	BUM1, SHL, STM,...	KNOX-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Dde_g48747	KNAT3	KNOX-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os03g51710.1	BP, BP1, KNAT1,...	transcription factor (KNOX)	0.02	OrthoFinder output from all 47 species
Msp_g44272	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g62008	KNAT3	KNOX-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c18_18750V3.1	Pp3c18_18750	KNOTTED1-like homeobox gene 6	0.01	OrthoFinder output from all 47 species
Pp3c19_5610V3.1	Pp3c19_5610	No annotation	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008422	Homeobox_KN_domain	545	584

External Links

No external refs found!