Description : no hits & (original description: none)
Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Mp5g00060.1 | |
Cluster | HCCA: Cluster_41 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT5G11240 | No alias | transducin family protein / WD-40 repeat family protein | 0.13 | OrthoFinder output from all 47 species | |
Aob_g40498 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g11203 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene62302.t1 | Aspi01Gene62302 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0028.g024031 | No alias | not classified & original description: CDS=168-2150 | 0.08 | OrthoFinder output from all 47 species | |
Ceric.1Z072200.1 | Ceric.1Z072200 | not classified & original description: pacid=50586493... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000123.23 | No alias | No description available | 0.11 | OrthoFinder output from all 47 species | |
Cre12.g538500 | No alias | No description available | 0.21 | OrthoFinder output from all 47 species | |
Dcu_g09409 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Ehy_g02665 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01017246001 | No alias | No description available | 0.14 | OrthoFinder output from all 47 species | |
GSVIVT01035079001 | No alias | No description available | 0.08 | OrthoFinder output from all 47 species | |
Gb_29253 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os01g46060.1 | LOC_Os01g46060 | no hits & (original description: none) | 0.07 | OrthoFinder output from all 47 species | |
LOC_Os03g18840.1 | LOC_Os03g18840 | no hits & (original description: none) | 0.15 | OrthoFinder output from all 47 species | |
Lfl_g13113 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_10435957g0010 | No alias | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Msp_g11307 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g13559 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pp3c7_70V3.1 | Pp3c7_70 | transducin family protein / WD-40 repeat family protein | 0.03 | OrthoFinder output from all 47 species | |
Sam_g36919 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Smo404454 | No alias | No description available | 0.09 | OrthoFinder output from all 47 species | |
Solyc02g030080.4.1 | Solyc02g030080 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g116380.4.1 | Solyc03g116380 | no hits & (original description: none) | 0.18 | OrthoFinder output from all 47 species | |
Tin_g02088 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e001372_P001 | Zm00001e001372 | no hits & (original description: none) | 0.17 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0003909 | DNA ligase activity | IEP | HCCA |
MF | GO:0003911 | DNA ligase (NAD+) activity | IEP | HCCA |
MF | GO:0005198 | structural molecule activity | IEP | HCCA |
CC | GO:0005575 | cellular_component | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
CC | GO:0005840 | ribosome | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006260 | DNA replication | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006412 | translation | IEP | HCCA |
BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | HCCA |
MF | GO:0030515 | snoRNA binding | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0032040 | small-subunit processome | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043226 | organelle | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043229 | intracellular organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043603 | amide metabolic process | IEP | HCCA |
BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
No external refs found! |