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  5. Mp4g21330.1

Mp4g21330.1


Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica (sp|q0inc5|rh28_orysj : 648.0)


Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g21330.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00103870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT4G16630 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Aspi01Gene71775.t1 Aspi01Gene71775 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0021.g015637 No alias not classified & original description: CDS=1-2424 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.14 OrthoFinder output from all 47 species
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.15 OrthoFinder output from all 47 species
Dcu_g13828 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g26304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.12 OrthoFinder output from all 47 species
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
LOC_Os12g29660.1 LOC_Os12g29660 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.11 OrthoFinder output from all 47 species
Lfl_g05640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_11961g0010 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Ore_g27091 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13644 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g081580.4.1 Solyc04g081580 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Zm00001e010143_P002 Zm00001e010143 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.07 OrthoFinder output from all 47 species
Zm00001e034676_P001 Zm00001e034676 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 420 528
IPR011545 DEAD/DEAH_box_helicase_dom 212 382
No external refs found!