Mp4g14290.1 (ATRECQ4A, ATSGS1, RECQ4A)

Aliases : ATRECQ4A, ATSGS1, RECQ4A

Description : helicase component RecQ4A of RTR Holliday junction dissolution complex

Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp4g14290.1
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
Adi_g085938	MED34, ATRECQ2, RECQL2	component *(MED34) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Als_g01082	MED34, ATRECQ2, RECQL2	component *(MED34) of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Aop_g22121	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.01	OrthoFinder output from all 47 species
Ceric.17G060200.1	ATRECQ4A,...	helicase component *(RecQ4A) of RTR Holliday junction...	0.03	OrthoFinder output from all 47 species
Ceric.34G005600.1	RECQI1, Ceric.34G005600	not classified & original description: pacid=50623064...	0.04	OrthoFinder output from all 47 species
Cre03.g178950	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01023325001	ATRECQ4A, ATSGS1, RECQ4A	Cell cycle.mitosis and meiosis.meiotic...	0.08	OrthoFinder output from all 47 species
Gb_08699	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.09	OrthoFinder output from all 47 species
Gb_33079	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.04	OrthoFinder output from all 47 species
LOC_Os04g35420.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.06	OrthoFinder output from all 47 species
Len_g56734	RECQI1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10435954g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_10436537g0010	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.08	OrthoFinder output from all 47 species
MA_30494g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Msp_g27927	RECQI1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g41299	RECQI1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g25559	No alias	helicase component *(RecQ4A) of RTR Holliday junction...	0.02	OrthoFinder output from all 47 species
Smo98462	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc01g100280.4.1	RECQI1, Solyc01g100280	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.09	OrthoFinder output from all 47 species
Solyc01g103960.3.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.05	OrthoFinder output from all 47 species
Tin_g04085	RECQI1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e016051_P001	RecQl3, ATRECQ3,...	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	751	857
IPR002121	HRDC_dom	1116	1183
IPR032284	RecQ_Zn-bd	870	955
IPR011545	DEAD/DEAH_box_helicase_dom	546	714
IPR018982	RQC_domain	962	1078

External Links

No external refs found!

Mp4g14290.1 (ATRECQ4A, ATSGS1, RECQ4A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation