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  5. Mp4g13780.1

Mp4g13780.1


Description : component UPF2 of RNA quality control Exon Junction complex


Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g13780.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g019654 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aev_g28134 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03890 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Aop_g06089 No alias component *(UPF2) of RNA quality control Exon Junction... 0.01 OrthoFinder output from all 47 species
Cre17.g729250 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Dcu_g03185 No alias component *(UPF2) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.03 OrthoFinder output from all 47 species
Len_g19045 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Lfl_g03486 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
MA_10434184g0010 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Msp_g22211 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Pir_g14884 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Ppi_g04699 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g36558 No alias component *(UPF2) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 683 877
IPR003890 MIF4G-like_typ-3 55 205
IPR003890 MIF4G-like_typ-3 481 662
IPR007193 Upf2/Nmd2_C 1013 1146
No external refs found!