LOC_Os04g41680 (Os04g0494100)


Aliases : Os04g0494100

Description : 20.1 stress.biotic encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. homolog of carrot EP3-3 chitinase (EP3)


Gene families : OG_01_0000294 (Gene family) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os04g41680
Cluster HCCA cluster: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AT2G43570 CHI chitinase, putative 0.02 Gene family
AT2G43610 No alias Chitinase family protein 0.02 Gene family
GSVIVT01038108001 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.03 Gene family
GSVIVT01038111001 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
LOC_Os02g39330 Os02g0605900 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
LOC_Os05g33150 Os05g0399700 20.1 stress.biotic encodes a basic chitinase involved in... 0.02 Gene family
LOC_Os10g39700 Os10g0543400 20.1 stress.biotic encodes a basic chitinase involved in... 0.04 Gene family
MA_102538g0010 No alias 20.1 stress.biotic Chitinase family protein 0.03 Gene family
MA_10427514g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
MA_10430424g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.03 Gene family
MA_10431378g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
MA_10431378g0020 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
MA_10435326g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
MA_170598g0010 No alias 20.1 stress.biotic Chitinase family protein 0.02 Gene family
MA_18470g0020 No alias 20.1 stress.biotic encodes a basic chitinase involved in... 0.02 Gene family
MA_191308g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
MA_295712g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family
MA_36141g0010 No alias 20.1 stress.biotic encodes an EP3 chitinase that is... 0.03 Gene family
Smo14768 PACid_15413752 No description available 0.02 Gene family
Smo426710 PACid_15410374 No description available 0.02 Gene family
Zm00001d003190 GRMZM2G051943 20.1 stress.biotic Chitinase family protein 0.03 Gene family
Zm00001d017152 GRMZM2G129189 20.1 stress.biotic encodes an EP3 chitinase that is... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA InterProScan
BP GO:0006032 chitin catabolic process IEA InterProScan
BP GO:0016998 cell wall macromolecule catabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001002 Chitin-bd_1 29 62
IPR000726 Glyco_hydro_19_cat 241 288
IPR000726 Glyco_hydro_19_cat 91 234
No external refs found!