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  5. Mp4g09540.1

Mp4g09540.1 (EIF4A-III)


Aliases : EIF4A-III

Description : helicase component eIF4A3 of RNA quality control Exon Junction complex


Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Mp4g09540.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00181640 EIF4A-2,... Protein biosynthesis.translation initiation.mRNA... 0.02 OrthoFinder output from all 47 species
AT3G19760 EIF4A-III eukaryotic initiation factor 4A-III 0.02 OrthoFinder output from all 47 species
Ala_g13925 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.04 OrthoFinder output from all 47 species
Aob_g01779 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Aop_g03471 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene51862.t1 EIF4A-III,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g42587 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Cba_g71080 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g75441 EIF4A-2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001339.22 EIF4A-III RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Cre03.g199647 EIF4A-III RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
Dac_g29865 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Dcu_g37300 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04548 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036113001 EIF4A-III Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia 0.03 OrthoFinder output from all 47 species
LOC_Os03g36930.1 EIF4A-III, LOC_Os03g36930 helicase component eIF4A3 of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Lfl_g03950 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Ore_g10223 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10144 EIF4A-2 mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03000 EIF4A-III helicase component *(eIF4A3) of RNA quality control Exon... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002703 No alias not classified & original description: CDS=1-279 0.02 OrthoFinder output from all 47 species
Sam_g02045 No alias mRNA unwinding factor *(eIF4A)) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g19131 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.02 OrthoFinder output from all 47 species
Solyc11g033280.2.1 EIF4A-III, Solyc11g033280 helicase component eIF4A3 of RNA quality control Exon... 0.05 OrthoFinder output from all 47 species
Solyc12g095990.2.1 EIF4A-2, Solyc12g095990 mRNA unwinding factor (eIF4A) 0.02 OrthoFinder output from all 47 species
Solyc12g096000.2.1 EIF4A-2, Solyc12g096000 mRNA unwinding factor (eIF4A) 0.02 OrthoFinder output from all 47 species
Zm00001e013175_P002 EIF4A-2, Zm00001e013175 mRNA unwinding factor (eIF4A) 0.02 OrthoFinder output from all 47 species
Zm00001e016284_P001 EIF4A-III, Zm00001e016284 helicase component eIF4A3 of RNA quality control Exon... 0.04 OrthoFinder output from all 47 species
Zm00001e023523_P001 EIF4A-III, Zm00001e023523 helicase component eIF4A3 of RNA quality control Exon... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 263 371
IPR011545 DEAD/DEAH_box_helicase_dom 62 224
No external refs found!