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  5. Mp4g05150.1

Mp4g05150.1


Description : component U1C of U1 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0002867 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002867_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g05150.1

Target Alias Description ECC score Gene Family Method Actions
Als_g08191 No alias component *(U1C) of U1 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03992 No alias component *(U1C) of U1 snRNP complex & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.09G042200.1 Ceric.09G042200 component *(U1C) of U1 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.55 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Cre09.g401300 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Dac_g24274 No alias component *(U1C) of U1 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011011001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Gb_41077 No alias component U1C of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
LOC_Os02g16640.1 LOC_Os02g16640 component U1C of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Pir_g02748 No alias component *(U1C) of U1 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g067830.3.1 Solyc01g067830 component U1C of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Solyc06g008860.3.1 Solyc06g008860 component U1C of U1 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Spa_g25074 No alias component *(U1C) of U1 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013085 U1-CZ_Znf_C2H2 1 38
No external refs found!