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  5. Mp4g05120.1

Mp4g05120.1


Description : component psRPL28 of large ribosomal subunit proteome


Gene families : OG0006464 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g05120.1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AT2G33450 No alias Ribosomal L28 family 0.26 OrthoFinder output from all 47 species
Adi_g107767 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aev_g02708 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ala_g05691 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Als_g25918 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Als_g54254 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aob_g09499 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Aop_g69998 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Aspi01Gene02149.t1 Aspi01Gene02149 component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Azfi_s0087.g042281 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Ceric.06G041500.1 Ceric.06G041500 component *(bL28c) of large plastid ribosomal-subunit... 0.14 OrthoFinder output from all 47 species
Cre06.g265800 No alias Protein biosynthesis.organelle translation... 0.33 OrthoFinder output from all 47 species
Dac_g00398 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g05058 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Dde_g27683 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ehy_g00252 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.15 OrthoFinder output from all 47 species
GSVIVT01027870001 No alias Protein biosynthesis.organelle translation... 0.19 OrthoFinder output from all 47 species
Gb_39628 No alias component psRPL28 of large ribosomal subunit proteome 0.1 OrthoFinder output from all 47 species
LOC_Os05g01110.1 LOC_Os05g01110 component psRPL28 of large ribosomal subunit proteome 0.25 OrthoFinder output from all 47 species
Len_g11369 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
MA_10426581g0010 No alias component psRPL28 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species
Ore_g11040 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Ore_g11041 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Pir_g58585 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Pnu_g09843 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c5_28500V3.1 Pp3c5_28500 Ribosomal L28 family 0.09 OrthoFinder output from all 47 species
Pp3c6_1140V3.1 Pp3c6_1140 Ribosomal L28 family 0.03 OrthoFinder output from all 47 species
Sam_g23667 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Solyc09g090410.3.1 Solyc09g090410 component psRPL28 of large ribosomal subunit proteome 0.2 OrthoFinder output from all 47 species
Tin_g00322 No alias component *(bL28c) of large plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e004728_P001 Zm00001e004728 component psRPL28 of large ribosomal subunit proteome 0.29 OrthoFinder output from all 47 species
Zm00001e012787_P001 Zm00001e012787 component psRPL28 of large ribosomal subunit proteome 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006729 tetrahydrobiopterin biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019751 polyol metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034311 diol metabolic process IEP HCCA
BP GO:0034312 diol biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046146 tetrahydrobiopterin metabolic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0046173 polyol biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 54 113
No external refs found!