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  5. Mp4g04520.1

Mp4g04520.1 (SMU1)


Aliases : SMU1

Description : Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana (sp|q8w117|smu1_arath : 898.0)


Gene families : OG0006796 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006796_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g04520.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00069p00133460 SMU1,... Suppressor of mec-8 and unc-52 protein homolog 1... 0.03 OrthoFinder output from all 47 species
AT1G73720 SMU1 transducin family protein / WD-40 repeat family protein 0.03 OrthoFinder output from all 47 species
Aop_g11172 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene48663.t1 SMU1, Aspi01Gene48663 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Ceric.12G061400.1 SMU1, Ceric.12G061400 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000863.17 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.02 OrthoFinder output from all 47 species
Cre01.g020400 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.04 OrthoFinder output from all 47 species
Dcu_g01516 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01007685001 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.03 OrthoFinder output from all 47 species
Gb_10805 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.05 OrthoFinder output from all 47 species
LOC_Os01g21940.1 SMU1, LOC_Os01g21940 Suppressor of mec-8 and unc-52 protein homolog 1... 0.07 OrthoFinder output from all 47 species
Len_g02315 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Msp_g06595 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Pir_g07643 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Smo409107 SMU1 Suppressor of mec-8 and unc-52 protein homolog 1... 0.03 OrthoFinder output from all 47 species
Solyc06g064830.3.1 SMU1, Solyc06g064830 Suppressor of mec-8 and unc-52 protein homolog 1... 0.05 OrthoFinder output from all 47 species
Spa_g47371 SMU1 component *(SMU1) of SMU splicing factor complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e017539_P002 SMU1, Zm00001e017539 Suppressor of mec-8 and unc-52 protein homolog 1... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
MF GO:0008193 tRNA guanylyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080009 mRNA methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 271 349
IPR001680 WD40_repeat 476 512
IPR001680 WD40_repeat 217 242
No external refs found!