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  5. Mp4g04320.1

Mp4g04320.1 (PRCGB, PBD1)


Aliases : PRCGB, PBD1

Description : component beta type-4 of 26S proteasome


Gene families : OG0004283 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004283_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g04320.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272080 PRCGB, PBD1,... Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
AT4G14800 PBD2 20S proteasome beta subunit D2 0.16 OrthoFinder output from all 47 species
Adi_g008050 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Adi_g012746 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aev_g00486 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ala_g09690 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Aop_g00205 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Azfi_s0441.g070345 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Cba_g00483 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Ceric.27G023100.1 PRCGB, PBD1,... beta-type-4 component *(PBD) of 26S proteasome &... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.80 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Cre14.g610950 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.12 OrthoFinder output from all 47 species
Dac_g04914 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Dcu_g08528 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.07 OrthoFinder output from all 47 species
Dde_g00381 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
GSVIVT01001182001 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.07 OrthoFinder output from all 47 species
Gb_19481 PRCGB, PBD1 Proteasome subunit beta type-2-A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os03g48930.1 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.06 OrthoFinder output from all 47 species
Len_g12839 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
MA_119122g0010 PBD2 Proteasome subunit beta type-2-B OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_20372g0010 PBD2 Proteasome subunit beta type-2 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Msp_g00339 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.06 OrthoFinder output from all 47 species
Ore_g05376 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Pp3c20_18180V3.1 PRCGB, PBD1, Pp3c20_18180 20S proteasome beta subunit D1 0.03 OrthoFinder output from all 47 species
Sam_g09970 No alias beta-type-4 component *(PBD) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Smo165201 PRCGB, PBD1 Protein degradation.26S proteasome.20S core... 0.04 OrthoFinder output from all 47 species
Solyc09g082320.3.1 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.18 OrthoFinder output from all 47 species
Spa_g25247 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Spa_g46825 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.09 OrthoFinder output from all 47 species
Spa_g53642 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Tin_g04912 PRCGB, PBD1 beta-type-4 component *(PBD) of 26S proteasome &... 0.08 OrthoFinder output from all 47 species
Zm00001e005337_P001 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Zm00001e012245_P001 PRCGB, PBD1,... component beta type-4 of 26S proteasome 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0051603 proteolysis involved in protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 3 182
No external refs found!