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  5. Mp4g02570.1

Mp4g02570.1


Description : scaffolding component Sec13 of coat protein complex


Gene families : OG0003929 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003929_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g02570.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g23656 No alias scaffold component *(Sec13) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Als_g38950 No alias scaffold component *(Sec13) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Aob_g01580 No alias scaffold component *(Sec13) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Aop_g00498 No alias scaffold component *(Sec13) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Cba_g00744 No alias scaffold component *(Sec13) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Ceric.07G076900.1 Ceric.07G076900 scaffold component *(Sec13) of coat protein complex &... 0.02 OrthoFinder output from all 47 species
Cre17.g715750 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Dac_g01373 No alias scaffold component *(Sec13) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
LOC_Os03g61630.2 LOC_Os03g61630 scaffolding component Sec13 of coat protein complex 0.02 OrthoFinder output from all 47 species
Msp_g08312 No alias scaffold component *(Sec13) of coat protein complex &... 0.06 OrthoFinder output from all 47 species
Solyc02g087300.1.1 Solyc02g087300 scaffolding component Sec13 of coat protein complex 0.04 OrthoFinder output from all 47 species
Spa_g17930 No alias scaffold component *(Sec13) of coat protein complex &... 0.03 OrthoFinder output from all 47 species
Spa_g51337 No alias scaffold component *(Sec13) of coat protein complex &... 0.07 OrthoFinder output from all 47 species
Spa_g55109 No alias scaffold component *(Sec13) of coat protein complex &... 0.04 OrthoFinder output from all 47 species
Zm00001e009580_P001 Zm00001e009580 scaffolding component Sec13 of coat protein complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 206 245
IPR001680 WD40_repeat 12 42
IPR001680 WD40_repeat 152 196
IPR001680 WD40_repeat 55 91
IPR001680 WD40_repeat 102 137
No external refs found!