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Aliases : RPOC1
Description : DNA-directed RNA polymerase subunit beta OS=Marchantia polymorpha (sp|p06273|rpoc1_marpo : 145.0)
Gene families : OG0006500 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006500_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp4g02290.1 | |
| Cluster | HCCA: Cluster_13 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| ATCG00180 | RPOC1 | DNA-directed RNA polymerase family protein | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g25869 | RPOC1 | core component *(RpoC1) of plastid-encoded RNA... | 0.06 | OrthoFinder output from all 47 species | |
| Als_g17479 | RPOC1 | core component *(RpoC1) of plastid-encoded RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g01180 | RPOC1 | core component *(RpoC1) of plastid-encoded RNA... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.29G004700.1 | RPOC1, Ceric.29G004700 | not classified & original description: pacid=50625659... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.38G010000.1 | RPOC1, Ceric.38G010000 | core component *(RpoC1) of plastid-encoded RNA... | 0.05 | OrthoFinder output from all 47 species | |
| LOC_Os02g24614.1 | RPOC1, LOC_Os02g24614 | RpoC1 core component plastid-encoded RNA polymerase | 0.07 | OrthoFinder output from all 47 species | |
| Pir_g09480 | RPOC1 | core component *(RpoC1) of plastid-encoded RNA... | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0533.g027469 | No alias | not classified & original description: CDS=1-663 | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0533.g027470 | RPOC1 | not classified & original description: CDS=1-777 | 0.04 | OrthoFinder output from all 47 species | |
| Solyc01g017370.2.1 | RPOC1, Solyc01g017370 | DNA-directed RNA polymerase subunit beta OS=Nicotiana... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc01g017470.3.1 | RPOC1, Solyc01g017470 | DNA-directed RNA polymerase subunit beta OS=Solanum... | 0.08 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0009058 | biosynthetic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | HCCA |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |