Mp3g24820.1 (CP31B)

Aliases : CP31B

Description : RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana (sp|q9fgs0|cp31b_arath : 175.0)

Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp3g24820.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00197820	evm_27.TU.AmTr_v1...	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00061p00032260	PDE322, CP33,...	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AMTR_s00061p00142700	ATRBP31, CP31,...	RNA processing.organelle machineries.RNA...	0.02	OrthoFinder output from all 47 species
AMTR_s00166p00060690	ATRBP31, CP31,...	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
AT2G35410	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	OrthoFinder output from all 47 species
AT2G37220	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.05	OrthoFinder output from all 47 species
AT3G52150	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	OrthoFinder output from all 47 species
AT3G52380	PDE322, CP33	chloroplast RNA-binding protein 33	0.03	OrthoFinder output from all 47 species
AT4G24770	ATRBP31, CP31,...	31-kDa RNA binding protein	0.04	OrthoFinder output from all 47 species
Adi_g019288	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Adi_g022371	ATRBP31, CP31,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g053286	CP31B	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g00606	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g10264	ATRBP31, CP31,...	plastidial ribonucleoprotein *(CP33a) & original...	0.02	OrthoFinder output from all 47 species
Als_g08489	CP31B	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g10701	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g07067	ATRBP31, CP31,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07142	ATRBP31, CP31,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0007.g010976	No alias	not classified & original description: CDS=261-1286	0.05	OrthoFinder output from all 47 species
Azfi_s0017.g014465	ATRBP31, CP31,...	not classified & original description: CDS=173-1078	0.03	OrthoFinder output from all 47 species
Azfi_s0159.g053948	ATRBP31, CP31,...	not classified & original description: CDS=143-1057	0.02	OrthoFinder output from all 47 species
Ceric.38G067800.1	ATRBP31, CP31,...	not classified & original description: pacid=50580282...	0.05	OrthoFinder output from all 47 species
Dac_g21785	ATRBP31, CP31,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g01274	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g05473	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g05650	ATRBP31, CP31,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g10561	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007596001	CP31B	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
GSVIVT01025697001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.05	OrthoFinder output from all 47 species
GSVIVT01027917001	No alias	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris	0.02	OrthoFinder output from all 47 species
GSVIVT01032039001	No alias	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
GSVIVT01032361001	CP31B	RNA processing.organelle machineries.RNA...	0.03	OrthoFinder output from all 47 species
Gb_05747	PDE322, CP33	component psPSRP2 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Gb_29798	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os03g25960.1	LOC_Os03g25960	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os07g06450.1	PDE322, CP33,...	RNA-binding protein CP33, chloroplastic OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os07g43810.1	LOC_Os07g43810	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.02	OrthoFinder output from all 47 species
LOC_Os09g10760.1	LOC_Os09g10760	component psPSRP2 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
LOC_Os09g39180.1	ATRBP31, CP31,...	RNA editing factor (CP31)	0.03	OrthoFinder output from all 47 species
MA_10434075g0010	CP31B	component psPSRP2 of small ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
MA_185349g0010	No alias	29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana...	0.02	OrthoFinder output from all 47 species
MA_320479g0010	No alias	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_65183g0010	No alias	component psPSRP2 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Msp_g06420	ATRBP31, CP31,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g19962	CP31B	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c12_9890V3.1	Pp3c12_9890	chloroplast RNA-binding protein 29	0.01	OrthoFinder output from all 47 species
Pp3c24_17170V3.1	Pp3c24_17170	chloroplast RNA-binding protein 29	0.03	OrthoFinder output from all 47 species
Ppi_g18180	ATRBP31, CP31,...	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g06842	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g23920	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g006940.4.1	PDE322, CP33,...	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc03g111840.3.1	ATRBP31, CP31,...	RNA editing factor (CP31)	0.06	OrthoFinder output from all 47 species
Solyc04g074750.3.1	Solyc04g074750	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.07	OrthoFinder output from all 47 species
Solyc08g076840.3.1	Solyc08g076840	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Solyc09g007850.3.1	Solyc09g007850	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.05	OrthoFinder output from all 47 species
Spa_g07687	ATRBP31, CP31,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g08465	ATRBP31, CP31,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g05046	ATRBP31, CP31,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e003947_P001	ATRBP31, CP31,...	RNA editing factor (CP31)	0.03	OrthoFinder output from all 47 species
Zm00001e007101_P002	Zm00001e007101	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.02	OrthoFinder output from all 47 species
Zm00001e010844_P001	Zm00001e010844	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Zm00001e016211_P001	Zm00001e016211	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana...	0.03	OrthoFinder output from all 47 species
Zm00001e022086_P002	ATRBP31, CP31,...	RNA editing factor (CP31)	0.04	OrthoFinder output from all 47 species
Zm00001e032835_P001	PDE322, CP33,...	RNA-binding protein CP33, chloroplastic OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e033465_P001	ATRBP31, CP31,...	RNA editing factor (CP31)	0.03	OrthoFinder output from all 47 species
Zm00001e033636_P003	Zm00001e033636	component psPSRP2 of small ribosomal subunit proteome	0.03	OrthoFinder output from all 47 species
Zm00001e035630_P001	Zm00001e035630	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	199	269
IPR000504	RRM_dom	87	157

External Links

No external refs found!

Mp3g24820.1 (CP31B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation