Mp3g20090.1 (ABCA1, AtABCA1)

Aliases : ABCA1, AtABCA1

Description : subfamily ABCA transporter

Gene families : OG0001787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001787_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp3g20090.1
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AT2G41700	ABCA1, AtABCA1	ATP-binding cassette A1	0.04	OrthoFinder output from all 47 species
AT3G47730	ATH1, ATATH1, ABCA2	ATP-binding cassette A2	0.02	OrthoFinder output from all 47 species
Ala_g07489	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g09766	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0022.g016230	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: CDS=354-3422	0.02	OrthoFinder output from all 47 species
Cre03.g151400	ABCA1, AtABCA1	Solute transport.primary active transport.ABC...	0.02	OrthoFinder output from all 47 species
Cre14.g613950	ATH1, ATATH1, ABCA2	ABC transporter A family member 2 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dac_g10442	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g02291	ATH1, ATATH1, ABCA2	subfamily ABCA transporter & original description: none	0.03	OrthoFinder output from all 47 species
MA_10004022g0010	ATH15, ATATH15	ABC transporter A family member 11 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc04g015970.3.1	ABCA1, AtABCA1,...	subfamily ABCA transporter	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1630	1772
IPR003439	ABC_transporter-like_ATP-bd	728	871

External Links

No external refs found!