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  5. Mp3g17850.1

Mp3g17850.1


Description : E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum (sp|p0ch30|ring1_goshi : 139.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g17850.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT5G08139 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g020663 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Adi_g055004 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Aob_g27273 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Azfi_s0185.g056585 No alias not classified & original description: CDS=1-1950 0.03 OrthoFinder output from all 47 species
Azfi_s0230.g059174 No alias not classified & original description: CDS=1-867 0.03 OrthoFinder output from all 47 species
Cba_g05184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24805 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.16G066200.1 Ceric.16G066200 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.35G016500.1 Ceric.35G016500 not classified & original description: pacid=50581362... 0.02 OrthoFinder output from all 47 species
Dcu_g05540 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g02237 ATCRT1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08219 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g26594 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Ehy_g06759 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14500 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g27311 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_06048 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g31373 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_170709g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_9328282g0010 No alias E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g10633 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g10220 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g12845 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Pir_g24945 CIP8 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g27550 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g36482 ATCRT1 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pnu_g12284 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g10063 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002229 No alias not classified & original description: CDS=1-1332 0.03 OrthoFinder output from all 47 species
Sam_g09427 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g19690 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24681 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g27709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo18753 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Spa_g09700 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR039525 RNF126-like_zinc-ribbon 48 82
IPR001841 Znf_RING 431 472
No external refs found!