Mp3g16910.1


Description : component POP1 of RNA-dependent RNase P complex


Gene families : OG0005078 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005078_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g16910.1

Target Alias Description ECC score Gene Family Method Actions
AT2G47300 No alias No description available 0.02 OrthoFinder output from all 47 species
Aop_g26723 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0074.g037461 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.03 OrthoFinder output from all 47 species
Cba_g71528 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
Ceric.26G047600.1 Ceric.26G047600 component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
Cre04.g214690 No alias RNA processing.ribonuclease activities.RNase P... 0.04 OrthoFinder output from all 47 species
Ehy_g23832 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
Gb_02920 No alias component POP1 of RNA-dependent RNase P complex 0.04 OrthoFinder output from all 47 species
LOC_Os11g45250.1 LOC_Os11g45250 component POP1 of RNA-dependent RNase P complex 0.02 OrthoFinder output from all 47 species
Len_g47049 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.03 OrthoFinder output from all 47 species
MA_9780g0010 No alias component POP1 of RNA-dependent RNase P complex 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0026.g009477 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
Sam_g13556 No alias component *(POP1) of RNA-dependent RNase P complex &... 0.02 OrthoFinder output from all 47 species
Solyc11g007800.3.1 Solyc11g007800 component POP1 of RNA-dependent RNase P complex 0.11 OrthoFinder output from all 47 species
Zm00001e035916_P003 Zm00001e035916 component POP1 of RNA-dependent RNase P complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR009723 Pop1_N 20 207
IPR012590 POPLD_dom 572 648
No external refs found!