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  5. Mp3g13780.1

Mp3g13780.1


Description : SSU processome assembly factor (UTP21)


Gene families : OG0005878 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005878_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g13780.1
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT4G04940 No alias transducin family protein / WD-40 repeat family protein 0.21 OrthoFinder output from all 47 species
Ala_g07767 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Aop_g08279 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037313 No alias SSU processome assembly factor *(UTP21) & original... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021348.51 No alias No description available 0.08 OrthoFinder output from all 47 species
Cre10.g466250 No alias No description available 0.21 OrthoFinder output from all 47 species
Dcu_g02020 No alias SSU processome assembly factor *(UTP21) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g18111 No alias SSU processome assembly factor *(UTP21) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01034133001 No alias No description available 0.09 OrthoFinder output from all 47 species
Gb_24979 No alias SSU processome assembly factor (UTP21) 0.05 OrthoFinder output from all 47 species
LOC_Os06g43690.1 LOC_Os06g43690 SSU processome assembly factor (UTP21) 0.15 OrthoFinder output from all 47 species
Lfl_g16684 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g02333 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Sam_g13536 No alias SSU processome assembly factor *(UTP21) & original... 0.03 OrthoFinder output from all 47 species
Smo78691 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc01g087670.3.1 Solyc01g087670 SSU processome assembly factor (UTP21) 0.15 OrthoFinder output from all 47 species
Tin_g11820 No alias SSU processome assembly factor *(UTP21) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e037473_P002 Zm00001e037473 SSU processome assembly factor (UTP21) 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 192 278
IPR007319 SSU_processome_Utp21 691 915
IPR001680 WD40_repeat 551 587
IPR001680 WD40_repeat 474 504
No external refs found!