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  5. Mp3g12140.1

Mp3g12140.1


Description : associated component HDC1/Rxt3 of histone deacetylase machineries


Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g12140.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g05483 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Als_g19270 No alias associated component *(HDC1) of histone deacetylase... 0.01 OrthoFinder output from all 47 species
Aob_g03580 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Azfi_s0075.g037618 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Ceric.1Z065200.1 Ceric.1Z065200 associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Cre03.g182600 No alias Chromatin organisation.histone modifications.histone... 0.01 OrthoFinder output from all 47 species
Ehy_g07857 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
GSVIVT01000253001 No alias Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder output from all 47 species
LOC_Os07g29450.1 LOC_Os07g29450 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g03346 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Lfl_g10369 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ore_g06630 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Ppi_g03202 No alias associated component *(HDC1) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018699 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Sam_g36521 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Solyc05g056340.3.1 Solyc05g056340 associated component HDC1/Rxt3 of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Spa_g08092 No alias associated component *(HDC1) of histone deacetylase... 0.01 OrthoFinder output from all 47 species
Spa_g15395 No alias associated component *(HDC1) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Tin_g13819 No alias associated component *(HDC1) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Zm00001e010714_P003 Zm00001e010714 associated component HDC1/Rxt3 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0016575 histone deacetylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR013951 Rxt3 410 451
No external refs found!