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  5. Mp3g05650.1

Mp3g05650.1


Description : poly(A) RNA polymerase (TRF4)


Gene families : OG0001897 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001897_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g05650.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g106417 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Aop_g11641 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Cba_g16668 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Ceric.29G060500.1 Ceric.29G060500 nucleotidyl transferase component *(TRL) of TRAMP... 0.04 OrthoFinder output from all 47 species
Cre09.g403000 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre09.g410500 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g50905 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Ehy_g03821 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
LOC_Os01g48210.1 LOC_Os01g48210 poly(A) RNA polymerase (TRF4) 0.04 OrthoFinder output from all 47 species
Lfl_g03072 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.03 OrthoFinder output from all 47 species
Nbi_g07177 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.02 OrthoFinder output from all 47 species
Sam_g14917 No alias nucleotidyl transferase component *(TRL) of TRAMP... 0.01 OrthoFinder output from all 47 species
Solyc10g006990.3.1 Solyc10g006990 poly(A) RNA polymerase (TRF4) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 229 305
IPR002058 PAP_assoc 399 457
No external refs found!