Description : tRNA cytidine-methyltransferase (TRM4)
Gene families : OG0003443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003443_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Mp3g05200.1 | |
Cluster | HCCA: Cluster_41 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00008p00028880 | evm_27.TU.AmTr_v1... | RNA processing.RNA modification.rRNA/tRNA... | 0.03 | OrthoFinder output from all 47 species | |
AT2G22400 | No alias | S-adenosyl-L-methionine-dependent methyltransferases... | 0.09 | OrthoFinder output from all 47 species | |
AT3G05365 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
Adi_g022731 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g04163 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.01 | OrthoFinder output from all 47 species | |
Ala_g19092 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.03 | OrthoFinder output from all 47 species | |
Als_g02576 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g05031 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0016.g014403 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.01G076100.1 | Ceric.01G076100 | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020562.25 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.03 | OrthoFinder output from all 47 species | |
Cre03.g179860 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.12 | OrthoFinder output from all 47 species | |
Dcu_g13064 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.01 | OrthoFinder output from all 47 species | |
Ehy_g13681 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01003416001 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.06 | OrthoFinder output from all 47 species | |
Gb_17436 | No alias | tRNA cytidine-methyltransferase (TRM4) | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os09g29630.1 | LOC_Os09g29630 | tRNA cytidine-methyltransferase (TRM4) | 0.11 | OrthoFinder output from all 47 species | |
Len_g57891 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g16441 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g49641 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.04 | OrthoFinder output from all 47 species | |
Smo418525 | No alias | RNA processing.RNA modification.rRNA/tRNA... | 0.07 | OrthoFinder output from all 47 species | |
Solyc05g051520.3.1 | Solyc05g051520 | tRNA cytidine-methyltransferase (TRM4) | 0.12 | OrthoFinder output from all 47 species | |
Spa_g04282 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g45505 | No alias | EC_2.1 transferase transferring one-carbon group &... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e034437_P004 | Zm00001e034437 | tRNA cytidine-methyltransferase (TRM4) | 0.12 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000154 | rRNA modification | IEP | HCCA |
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
CC | GO:0000176 | nuclear exosome (RNase complex) | IEP | HCCA |
CC | GO:0000178 | exosome (RNase complex) | IEP | HCCA |
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
BP | GO:0001510 | RNA methylation | IEP | HCCA |
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004527 | exonuclease activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
CC | GO:0005730 | nucleolus | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0008134 | transcription factor binding | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
MF | GO:0008649 | rRNA methyltransferase activity | IEP | HCCA |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
MF | GO:0010181 | FMN binding | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
MF | GO:0016435 | rRNA (guanine) methyltransferase activity | IEP | HCCA |
MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | HCCA |
MF | GO:0030515 | snoRNA binding | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
BP | GO:0031167 | rRNA methylation | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
BP | GO:0036265 | RNA (guanine-N7)-methylation | IEP | HCCA |
MF | GO:0043167 | ion binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | HCCA |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0070475 | rRNA base methylation | IEP | HCCA |
BP | GO:0070476 | rRNA (guanine-N7)-methylation | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140102 | catalytic activity, acting on a rRNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
CC | GO:1905354 | exoribonuclease complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001678 | MeTrfase_RsmB/NOP2 | 182 | 368 |
No external refs found! |