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  5. Mp3g02880.1

Mp3g02880.1 (SNL4)


Aliases : SNL4

Description : component SNL of histone deacetylase machineries


Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g02880.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.02 OrthoFinder output from all 47 species
AT1G23810 No alias Paired amphipathic helix (PAH2) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.05 OrthoFinder output from all 47 species
AT1G24230 No alias Paired amphipathic helix (PAH2) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G24250 No alias Paired amphipathic helix (PAH2) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G27260 No alias Paired amphipathic helix (PAH2) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G27270 No alias Paired amphipathic helix (PAH2) superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G15020 SNL2 SIN3-like 2 0.04 OrthoFinder output from all 47 species
Adi_g058426 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Adi_g066433 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05403 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22302 SNL4 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Als_g42067 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g56003 SNL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g29157 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Aop_g00817 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Azfi_s0015.g014103 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.04 OrthoFinder output from all 47 species
Cba_g07499 SNL2 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Cba_g77516 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Ceric.31G072300.1 SNL4, Ceric.31G072300 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Dcu_g18942 SNL4 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Gb_35988 SNL4 component SNL of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
Len_g58076 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Lfl_g03517 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
MA_18241g0010 SNL4 component SNL of histone deacetylase machineries 0.05 OrthoFinder output from all 47 species
Ore_g44719 SNL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18041 SNL3, ATSIN3, SIN3 component *(SNL) of histone deacetylase machineries &... 0.02 OrthoFinder output from all 47 species
Sam_g14557 No alias component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Smo440352 SNL4 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Solyc02g067570.3.1 SNL2, Solyc02g067570 component SNL of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Spa_g18268 SNL4 component *(SNL) of histone deacetylase machineries &... 0.03 OrthoFinder output from all 47 species
Spa_g56389 SNL2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g13041 SNL4 component *(SNL) of histone deacetylase machineries &... 0.06 OrthoFinder output from all 47 species
Zm00001e017111_P002 SNL4, Zm00001e017111 component SNL of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Zm00001e025644_P001 SNL4, Zm00001e025644 component SNL of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species

HCCA
Type GO Term Name Evidence Source
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR031693 Sin3_C 1111 1360
IPR013194 HDAC_interact_dom 524 613
IPR003822 PAH 64 108
IPR003822 PAH 379 423
IPR003822 PAH 154 198
No external refs found!