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  5. Mp3g01860.1

Mp3g01860.1 (EMB1265, ATCPSF100,...)


Aliases : EMB1265, ATCPSF100, CPSF100, ESP5

Description : component CPSF100/Ydh1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0005611 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005611_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp3g01860.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00247750 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.07 OrthoFinder output from all 47 species
Aev_g10848 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Als_g01056 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aop_g12683 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.01 OrthoFinder output from all 47 species
Ceric.09G061000.1 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Cre12.g487600 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Dcu_g01795 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Gb_40959 EMB1265,... no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os09g39590.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Lfl_g36462 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Pir_g09678 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Sam_g18623 No alias component *(CPSF100/Ydh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Smo441578 EMB1265,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Solyc03g025540.3.1 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Spa_g04524 EMB1265,... component *(CPSF100/Ydh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Zm00001e020763_P002 EMB1265,... component CPSF100/Ydh1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 39 207
IPR025069 Cpsf2_C 662 742
IPR022712 Beta_Casp 259 382
IPR011108 RMMBL 550 603
No external refs found!