Mp2g23970.1 (AtLIG6, LIG6)

Aliases : AtLIG6, LIG6

Description : DNA ligase (LIG6)

Gene families : OG0001904 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001904_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp2g23970.1
Cluster	HCCA: Cluster_64

Target	Alias	Description	ECC score	Gene Family Method
Adi_g109165	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.01	OrthoFinder output from all 47 species
Ehy_g20815	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01030942001	AtLIG6, LIG6	DNA damage response.DNA repair mechanisms.nonhomologous...	0.02	OrthoFinder output from all 47 species
LOC_Os01g49180.1	AtLIG6, LIG6,...	DNA ligase (LIG6)	0.02	OrthoFinder output from all 47 species
Lfl_g09242	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Ore_g16105	ATLIG1, LIG1	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023987	AtLIG6, LIG6	EC_6.5 ligase forming phosphoric ester bond & original...	0.02	OrthoFinder output from all 47 species
Smo97073	ATLIG1, LIG1	DNA damage response.DNA repair mechanisms.base excision...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003909	DNA ligase activity	None	Extended
MF	GO:0003910	DNA ligase (ATP) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006310	DNA recombination	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016482	cytosolic transport	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0030906	retromer, cargo-selective complex	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012308	DNA_ligase_ATP-dep_N	1006	1182
IPR012310	DNA_ligase_ATP-dep_cent	1254	1475
IPR001279	Metallo-B-lactamas	105	229
IPR011084	DRMBL	368	471
IPR012309	DNA_ligase_ATP-dep_C	1501	1610

External Links

No external refs found!

Mp2g23970.1 (AtLIG6, LIG6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation