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  5. Mp2g17650.1

Mp2g17650.1


Description : component MPE1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001168 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001168_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp2g17650.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00219730 evm_27.TU.AmTr_v1... E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G47430 No alias DWNN domain, a CCHC-type zinc finger 0.03 OrthoFinder output from all 47 species
Adi_g013405 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Adi_g102684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20650 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aob_g15312 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Aop_g11290 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aspi01Gene16755.t1 Aspi01Gene16755 component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Aspi01Gene58252.t1 Aspi01Gene58252 component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Azfi_s0466.g072795 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Cba_g14090 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Ceric.39G057500.1 Ceric.39G057500 component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Cre12.g543303 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g34940 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.01 OrthoFinder output from all 47 species
Dcu_g06496 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
LOC_Os03g45730.1 LOC_Os03g45730 E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g38659 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Msp_g25720 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Nbi_g35870 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Ore_g26290 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Sam_g17748 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Sam_g39118 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Solyc08g061890.4.1 Solyc08g061890 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc10g083150.3.1 Solyc10g083150 component MPE1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Spa_g10359 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Tin_g09334 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Tin_g27178 No alias component *(MPE1) of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
InterPro domains Description Start Stop
IPR025829 Zn_knuckle_CX2CX3GHX4C 195 215
IPR014891 DWNN_domain 4 76
IPR001878 Znf_CCHC 560 574
No external refs found!